In alphabetical order by primary author
- Abskharon, Crystal structure of a confirmation antibody, JBC 2020
- Anderson, An Interfacial Mechanism, JMB 2001
- Anderson, Granulysin Crystal Structure and a Structure-derived Lytic Mechanism, JMB, 2003
- Anderson, Draft crystal structure of the vault, PLoS Biology, 2007
- Apostol, Crystallographic Studies of Prion Protein (PrP) Segments, JBC 2010
- Apostol, Atomic structures suggest determinants, Biochemistry 2011
- Arbing, The crystal structure of the mycobacterium tuberculosis Rv3019c-Rv3020c, Protein Science, 2010
- Balbirnie, An Amyloid-forming Peptide, PNAS 2001
- Bell, Crystal Structure of Nucleotide-Free, Biochemistry,1997
- Bennett, Refined Structure of Monomeric, Protein Science, 1994
- Bennet, Deposition diseases and 3D domain swapping, Structure, 2006
- Benson, Amyloid Nomenclature 2018, Amyloid, 2018
- Benesch, A structured core domain of αB-crystallin, 2014
- Binsen, Cryo-EM of full-length alpha-synuclein reveals, Nature_2018.pdf
- Bork, Genome an Proteome Informatics Current Opinion in Structural Biology, 2000
- Bowers, Prolinks: a database of protein functional linkages derived from coevolution, Genome Biology, 2004
- Bowers, Use of Logic, Science, 2004
- Bowers, Utilizing logical relationships, FEBS, 2005
- Boyer, Structures of fibrils formed by alpha-synuclein, NSMB 2019
- Brewster, Indexing amyloid peptide, Acta Cryst D 2015
- Brumshtein, Formation of amyloid fibers, jbc, 2014
- Brumshtein, Inhibition by small-molecule ligands of formation of amyloid fibrils, eLife, 2016
- Buxbaum, Amyloid nomenclature 2024: update, novel proteins, and recommendations, 2024
- Cheng, Macrocyclic β-sheet mimics that antagonize protein aggregation, Nature Chemistry, 2012
- Chim, The TB Structural Genomics, Tuberculosis, 2011
- Colletier, Molecular basis for amyloid beta, PNAS 2011
- Cruz, Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy, Journal of Clinical Investigation, 2008
- Deane, Protein Interactions Two Methods, Mol & Cell. Proteomics 2002
- Diaz-Avalos, Cross Beta Order and Diversity, JMB, 2003
- Duan, Describing Biological Prot Interactions, Mol & Cell. Proteomics 2002
- Dym, The Crystal Structure of D-Lactate Dehydrogenase, PNAS 2000
- Dym, Sequence-Structure Analysis, Protein Science 2001
- Dym, Chapter 21-3 Detection of Errors in Protein models Kluwer Academic Publishers, 2001
- Eisenberg, Hydrophobic Moments and Protein Structure, 1982
- Eisenberg, Glories of Protein Structure, Structure 1999
- Eisenberg, Protein Functions in the Post-Genomic Era, Nature 2000
- Eisenberg, Structure-Function Relationships of Glutamine Synthetases, BBA 2000
- Eisenberg, Heroic Battles of Protein Wars, Science 2002
- Eisenberg, John Tileston Edsall, Trends in Biochemical Sciences, 2002
- Eisenberg, The discovery of the alpha-helix and beta-sheet, PNAS 2003
- Eisenberg, Present at the Flood-How Structural Molecular Biology Came About Review Nature Structural and Molecular Biology, 2005
- Eisenberg, Bioinformatic challenges for the next decade, Phil Trans 2006
- Eisenberg, The Structural Biology of Protein, Acc Chem Res 2006
- Eisenberg, The Amyloid State of Proteins in Human Diseases, 2012
- Eisenberg, Structural Studies of Amyloid Proteins at the Molecular Level, Ann Rev Bioch, 2017
- Eisenberg, Taming Tangled Tau, Nature News & Views, 2017
- Eisenberg, How Hard It Is Seeing What Is in Front of Your Eyes, Cell, 2018
- Eisenberg, Paul D. Boyer, Science, 2018
- Eisenberg, Donald M. Crothers, National Academy of Sciences Biographical Memoirs, 2018
- Gallat, Dynamic Coupling of Intrinsically Disordered Proteins .. 2012
- Ghirlanda, A Hierarchic Approach, JMB 2002
- Gill, Crystal Structure of Phosphinothricin, Biochemistry, 2001
- Gill, Multicopy Crystallographic Refinement, Biochem 2002
- Goldschmidt, Identifying the amylome, PNAS 2010
- Goldschmidt, Toward rational protein crystalliation, Protein Science 2007
- Goulding, Crystal structure of a major secreted, Protein Science, 2002
- Goulding, Thiol-Disulfide Exchange, Biochem 2002
- Goulding, Structural genomics of mycobacterium tuberculosis-a preliminary report of progress at UCLA Biophysical Chemistry, 2003
- Goulding, Gram-positive DsbE Proteins Function Differently from Gram-negative DsbE Homologs, J Biol Chem, 2004
- 236 Goulding, Regulation by Oligomerizaiton, JMB, 2005
- Goulding, The structure and computational, J. Mol. Biol. 2007
- Graeber, Bioinformatic Identification, Nature Genetics 2001
- Graeber, Gene expression profiles in Leprosy, Science, 2003
- Guenther, Atomic structures of TDP-43 LCD segments, Nature Struct & Mol Bio, 2018
- Guo, Runaway domain swapping in amyloid-like fibrils, PNAS 2006
- Guo, The mechanism of the amyloidogenic conversion of T7 endonuclease I, JBC 2007
- Guo, The structure of a fibril-forming sequence, Protein Science, 2008
- Hermjakob, The HUPO PSI’s Molecular Interaction, Nature Biotechnology, 2004
- Hill, Retrospective: Emil L. Smith (1911 – 2009), ASBMB news, October 2009
- Hughes, Atomic structures of low-complexity protein segments, Science, 2018
- Hsu, The Primary Mechanism of Attenuation, PNAS2003
- Ivanova, Role of the C-Terminal, Biochemistry, 2003
- Ivanova, An amyloid-forming segment, PNAS, 2004
- Ivanova, Systematic Screen, PNAS 2006
- Ivanova, Molecular basis for insulin fibril assembly, PNAS, 2009
- Ivanova, Aggregation-triggering segments of SOD1 ï¬bril, PNAS, 2013
- Kato Masato, Cell-free Formaton of RNA, Cell 2012
- Kerrien, Broadening the Horizon, BMC Biology, 2007
- Khakshoor, X-ray Crystallographic Structure, JACS 2010
- Kim, Functional Linkages Can Reveal, Structure 2007
- Kleiger, The 1.7A Crystal Structure, JMB 2000
- Kleiger, 3D Structure and Significance, Biochemistry, 2001
- Kleiger, GXXXG and AXXXA, Biochemistry 2002
- Kleiger, GXXXG and GXXXA Motifs, JMB 2002
- Kleiger, PFIT and PFRIT, Protein Science 2004
- Korman, A synthetic biochemistry system, Protein Sci 2013
- Krotee, Atomic Structure of fibrillar segments, 2017
- Kuriyan, The origin of protein interactions and allostery in colocalization, Nature Review 2007
- Kurt, A proposed mechanism for the promotion of prion conversion, JBC, 2014
- Kurt, Human prion protein sequence, J of Clinical Investigation, 2015
- Laganowsky, Crystal structures of trncated, Protein Science, 2010
- Laganowsky, Non-3D domain swapped crystal structure of truncated zebrafish, Protein Science, 2010
- Laganowsky Atomic View of a Toxic, 2012 • Science Direct: Abstract • Reprint • Full Text
- Landau Towards a Pharmacophore, PLOS, 2011
- Landgraf, Analysis of Heregulin Symmetry, Protein Engineering 1999
- Landgraf, Heregulin, Biochemistry 2000
- Landgraf, 3D Cluster, JMB 2001
- Lee, Seeded conversion of recombinant, Nature Structural Biology, 2003
- Lee, Structure of superoxide dismutase from Pyrobaculum, Acta Crystallographica, 2003
- Llewellyn, Annotating proteins with generalized, PNAS 2008
- Li, Use of Genetic Profiling in Leprosy to Discriminate Clinical Forms of the Disease, science, 2003
- Li, Detection of Parallel Functional Modules by Comparative Analysis of Genome Sequences, Nature Biotechnology, 2005
- Li, Structure-Based Design, JACS, 2014
- Li, Crystal Structure of a RuBisCO-like Protein from the Green Sulfur Bacterium Chlorobium tepidum, Structure, 2005
- Liu, The Crystal Structure of 3D Domain, PNAS 1998
- Liu, A Domain-Swapped RNase A Dimer, Nat Struc Biol 2001
- Liu, Two Three Dimensional Domain-Swapped RNAse, Protein Science, 2002
- Liu, 3D Domain Swapping, Protein Science 2002
- Liu, Toll-like Receptor Triggering of a Vitamin-D, Science 2006
- Liu, Beta2-microglobulin forms, nature structural, 2011
- Liu, Characteristics of Amyloid-Related Oligomers, JACS,2011
- Liu Cong, Out of Register, PNAS 2012
- Lu, Jiahui, CryoEm Structure of the low-complexity domain, Nature Comm. 2020
- Luthy, Assessment of protein models, Nature, 1992
- Maji, Functional Amyloids as Natural Storage, Science Express 2009
- Mallick, Selecting Protein Targets, PNAS 2000
- Mallick, Genomic Evidence that the Intracellular, PNAS, 2002
- Mallick, The directional atomic solvation, PNAS 2002
- Marcotte, A Census of Protein Repeats, JMB 1999
- Marcotte, A Combined Algorithm, Nature 1999
- Marcotte, Detecting Protein Functions, Science 1999
- Marcotte, Localizing Proteins, PNAS 2000
- Marcotte, Mining Literature, Bioinformatics 2001
- McCarty, Selective Dimerization, Molecular Cell, 2003
- Cell-free Formation of RNA Granules, Cell 2012
- Medrano Soto, Inferring molecular function, Trend in Genetics 2008
- Melanie, Deposition Diseases and 3D Domain Swapping Structure, 2006
- Miallau, Structure and Proposed Activity, JBC 2008
- Miller, Using inferred residue contacts to distinguish between correct and incorrect protein models, Bioinformatics, 2008
- Min Andrew, The crystal structure of the Rv0301, Protein Society, 2012
- Mueller, The 1.70 Ž X-ray crystal structure of Mycobacterium tuberculosis phosphoglycerate mutase, Acta Crystallographica Section D, 2005
- Mura, The Crystal Structure of Heptameric Sm Protein, PNAS 2001
- Mura, Structure and Function of an Archaeal Homolog, JMB, 2003
- Mura, Structure and assembly of an augmented, PNAS, 2003
- Mura, The Oligomerication and ligand-binding, Protein Science, 2003
- Nelson, Structure of the cross-beta spine, Nature, 2005
- Nelson, The Structure from microcrystals of the cross-beta-spine of amyloid ESRF Highlight, 2006
- Nelson, Recent atomic models of amyloid fibril structure Current Opinion in Structural Biology, 2006
- Ogihara, Design of 3D Domain Swapped Dimers, PNAS 2001
- Omid, X-ray Crystallographic Structure of an Artificial β-Sheet Dimer
- Orchard, The minimum information required for reporting a molecular interaction experiment (MIMIx), Nature Biotech 2007
- Ostapchenko, Two amyloid states, JMB, 2010
- Pawson, Assembly of Cell Regulatory, Science 445
- Pellegrini, Phylogenetic profiling The Atrium, 2004
- Pu, Half a Century of Amyloids, Royal Society of Chemistry, 2020
- Rachman, Mycobacterium tuberculosis gene expression Microbes, 2006
- Rachman, Unique Transcriptome Signature, Infection and Immunity 2006
- Rees, Turning a reference inside-out-commentary on an article by stevens and arkin entitled- are membrane proteins ‘inside-out’ proteins Proteins, 2000
- Reinhardt, DPANN: Improved Sequence to Structure Alignments Following Fold Recognition, Proteins 2004
- Riley, Inferring protein domain interactions, Genome Biology 2005
- Riley, Identifying cognate binding pairs, PLoS 2008
- Rodriguez, Structure of the toxic core of a-synuclein from invisible crystals, Nature 2015
- Ruth, A-L-iduronidase, Acta D 2000
- Saelices, Amyloid seeding of transthyretin, PNAS, 2018
- Saelices, A pair of peptides inhibits seeding, JBiolChem 2019
- Sangwan, Inhibition of synucleinopathic seeding, Elife, 2020
- Sawaya, Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED, PNAS, 2016
- Sawaya, Protein crystal structure obtained at 2.9 Å resolution, PNAS, 2014
- Sawaya, A double S shape provides the structural basis for the extraordinary binding specificity, Cell, 2008
- Sawaya, Atomic structures of amyloid cross-beta spines reveal varied steric zippers, Nature, 2007
- Salwinski, Motif-Based Fold Assignment, Protein Science 2001
- Salwinski, Computational Methods of Analysis, Curr Op 2003
- Salwinski, The Database of Interacting Proteins, NAR, 2004
- Salwinski, In Silico simulation of biological networks, Nature Biotech, 2004
- Salwinski, The minimum information required, Nature Biotechnolgoy 2007
- Salwinski, The MiSink Plugin, Bioinformatics 2007
- Salwinski, Recurated protein interaction, Nature Methods, 2009
- Sambashivan, Amyloid-like fibrils, Nature, 2005
- Sangwan, Perspective on SOD1 mediated toxicity, Review, Postepy Biochemii, 2016
- Sawaya, Atomic structures of amyloid cross-b spines reveal varied steric zippers, Nature 2007
- Sievers, Structure-based design of non-natural, Nature 2011
- Singer, Identification of Heregulin, Journal Biol Chem 2001
- Soragni, Toxicity of Eosinophil, MBP Molecular Cell, 2015
- Soragni, Crystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif, J Phys Chem, 2015
- Sprinzak, Detecting coordinated regulation of multi-protein complexes, BMC Syst Biol, 2010
- Steere, Characterization of High Order Diphtheria, Biochemistry 2000
- Strong, Inference of protein function, Genome Biology 2003
- Strong, Visualization and Interpretation of Protein Networks, Nucleic Acids Reserach, 2003
- Strong, A Web-based Comparative Genomics tutorial Microbiology Eduction, 2004
- Strong, Toward the structural genomics of complexes, PNAS 2006
- Strong, The protein network as a tool, Progress in Drug Res 2006
- Stroud, StroudThe zipper groups of the amyloid state of proteins, Acta Cryst Biol Cryst, 2013
- Stroud, Toxic Fibrillar Oligomers of Amyloid-Beta Have Cross-Beta Structure, PNAS, 2012
- Teng, Short protein segments can drive, PEDS, 2009
- Terwilliger, The TB stuructural genomics consortium
- Thompson, The 3D profile method, PNAS 2006
- Tsemekhman, Cooperative hydrogen, Protein Science, 2007
- Wang, Structure of a Nudix, Acta, 2002
- Wang, Crystal structure of a Pantothenate, Protein Science, 2003
- Wang, Snapshots of the Pantothenate, ACA 2005
- Wang, Crystal structure of the Pantothenate, Biochemistry, 2006
- Wang, Bacterial Inclusion Bodies, PLoS Biology, 2008
- Wang, Multidimensional Structure, Angew Chem Int Ed 2010
- White, A Novel Inhibitor, JBS, 2007
- Wiltzius, Atomic Structures of the cross-beta spine of islet amyloid polypeptide, Protein Science, 2008
- Wiltzius, Atomic structures of IAPP (amylin) fusions suggest a mechanism, Protein Science, 2009
- Wiltzius, Molecular mechanisms for protein-encoded inheritance, Nat Struct Mol Bio, 2009